Phylogenetic error as a function of population size. Each plot shows the phylogenetic errors for inferences from our direct inference method (black circles), indirect inference using fastPHASE (light grey triangles), and indirect inference using haplotyper (dark grey squares) as a function of number of input haplotypes. Plots are provided for two window sizes (5 and 10 SNPs). Each data point in the plot was computed by running each algorithm over 200 randomly generated data-sets, (a) window size 5. (b) window size 10.
Sridhar et al. BMC Bioinformatics 2007 8:472 doi:10.1186/1471-2105-8-472