|
Motifs significantly associated with gene expression changes in long lived mutants, sch9Δ, ras2Δ, and tor1Δ, with respect to the wild-type yeast. |
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| sch9Δ/wt |
ras2Δ/wt |
tor1Δ/wt |
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| TF |
Consensus |
AC |
p-value |
q-value |
AC |
p-value |
q-value |
AC |
p-value |
q-value |
|
|
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| Fhl1 |
RTGT-YGGRTG |
17.0 |
0 |
0 |
12.4 |
0 |
0 |
16.0 |
0 |
0 |
| Msn2/4 |
AGGGG |
15.0 |
0 |
0 |
15.4 |
0 |
0 |
12.5 |
0 |
0 |
| Gis1 |
AWAGGGAT |
12.0 |
0 |
0 |
12.5 |
0 |
0 |
10.6 |
0 |
0 |
| Sum1/Ndt80 |
GACACAAAA |
8.7 |
0 |
0 |
9.3 |
0 |
0 |
9.2 |
0 |
0 |
| Pho4 |
GY-TSKCACGTG-G |
7.3 |
0.0006 |
0.0013 |
9.5 |
0 |
0 |
8.7 |
0.0006 |
0.0025 |
| Pdr3 |
S-TCCGYGGAA |
6.0 |
0.011 |
0.012 |
9.1 |
0.0006 |
0.0009 |
4.4 |
0.067 |
0.077 |
| Cad1 |
ATTAGTAAGC |
5.9 |
0.014 |
0.015 |
8.5 |
0.0006 |
0.0009 |
4.6 |
0.033 |
0.048 |
| Mig1 |
CGCATMCCCCAC |
5.2 |
0.037 |
0.029 |
7.8 |
0 |
0 |
5.6 |
0.053 |
0.066 |
| Met31 |
MWGTGTGGCR |
4.9 |
0.041 |
0.031 |
9.2 |
0 |
0 |
5.4 |
0.047 |
0.061 |
| Hsf1 |
GAW-TTCTAGAA |
4.3 |
0.16 |
0.083 |
9.1 |
0 |
0 |
4.6 |
0.087 |
0.091 |
| Zap1 |
ACCYT-AGGTT |
3.8 |
0.43 |
0.16 |
12.1 |
0 |
0 |
5.2 |
0.045 |
0.059 |
| Met4 |
AMAA-TGTGG |
3.4 |
0.45 |
0.16 |
9.8 |
0 |
0 |
5.8 |
0.054 |
0.067 |
| Cbf1 |
RRTCACGTG |
3.3 |
0.45 |
0.16 |
9.2 |
0 |
0 |
5.3 |
0.038 |
0.054 |
| Swi4 |
CRCGAAAA |
3.2 |
0.39 |
0.15 |
3.5 |
0.27 |
0.080 |
11.8 |
0 |
0 |
| Abf1 |
CGT|-ARTGAT |
-5.2 |
0.033 |
0.027 |
-9.3 |
0 |
0 |
-9.2 |
0 |
0 |
| Xbp1 |
GCCTCGARGMGR |
-7.1 |
0 |
0 |
4.4 |
0.24 |
0.075 |
-3.3 |
0.21 |
0.17 |
|
The 16 motifs that can be associated with a known TF and are significant in at least one of the three long-lived mutants are shown. | ||||||||||
Cheng et al. BMC Bioinformatics 2007 8:452 doi:10.1186/1471-2105-8-452 |
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