Table 1

Overall comparison between the bm25 and pmra models.

Run
Model
Description
P5
vs. bm25b
bm25*

bm25b
bm25 (k1 = 1.2, b = 0.75)
bm25, default parameters
0.381

-0.5%°
bm25*
bm25 (k1 = 1.9, b = 1.00)
bm25, optimal parameters
0.383
+0.5%°

pmra*
pmra (λ = 0.022, μ = 0.013)
pmra, optimal parameters
0.399
+4.7% **
+4.2% **

Table shows model parameters, P5 values over the entire test collection, and relative differences.

Lin and Wilbur BMC Bioinformatics 2007 8:423   doi:10.1186/1471-2105-8-423