Figure 1.

Pipeline for the identification and classification of TFs. The pipeline starts with the complete collection of predicted proteins for a given species. Then an HMM search is conducted over this collection keeping all significant hits and discarding all proteins containing a transposase-related domain. Finally the Classifier produces a list of putative TFs grouped into families.

Riaño-Pachón et al. BMC Bioinformatics 2007 8:42   doi:10.1186/1471-2105-8-42
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