|
Top scoring features in branch site interval |
|
| FGA A-3mer3 [-40,-20] features |
Weight |
|
|
|
| ------------ctgacc------- |
0.1800 |
| -----------ctgacc-------- |
0.1678 |
| ----------------ctgacc--- |
0.1488 |
| ----------ctgacc--------- |
0.1453 |
| -------------cctgac------ |
0.1417 |
| ---------------cctgac---- |
0.1382 |
| ----------------tgaccc--- |
0.1371 |
| --------ctgacc----------- |
0.1370 |
| -----------------cctgac-- |
0.1368 |
| ------ctgacc------------- |
0.1359 |
| --------------ctgacc----- |
0.1358 |
| -------------------tctctc |
0.1303 |
| ------------------ccttct- |
0.1283 |
| -------------------cttttc |
0.1281 |
| ------------------cttttt- |
0.1281 |
| -------------ctcacc------ |
0.1254 |
| -----------ctcacc-------- |
0.1219 |
| ---------------ctgact---- |
0.1206 |
| -----------cctgac-------- |
0.1202 |
| -------------------tccctc |
0.1200 |
|
The 20 top-scoring A -3mer3 [-40,-20] features (i.e. composite features that start in the interval between -40 and -25 derived using FGA from a seed of trimers) are all related to either the branch-site consensus or the pyrimidine tract. | |
Dogan et al. BMC Bioinformatics 2007 8:410 doi:10.1186/1471-2105-8-410 |
|