Methodology article
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
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* Corresponding authors: Hao Li haoli@genome.ucsf.edu - Shoudan Liang shoudan@mdacc.tmc.edu
1 Department of Biochemistry and Biophysics, UCSF. 1700 4th Street, San Francisco, CA 94143-2542, USA
2 Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Blvd, Unit 237, Houston, TX 77030-4009, USA
BMC Bioinformatics 2007, 8:399 doi:10.1186/1471-2105-8-399
Published: 17 October 2007Additional files
Additional file 1:
Supplementary Tables. Tables showing the details of motif comparisons of fREDUCE against AlighACE and MatrixREDUCE are included here.
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Additional file 2:
Supplementary Figure 1. fREDUCE performance scaling as the motif length and number of degeneracies allowed is varied.
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