Table 2

Biological RNA structures.

No.

Description

Size (bases)


1

Minimal catalytic domains of the hairpin ribozyme satellite RNA of the Tobacco ringspot virus

65

2

U3 snoRNA 5' domain from Chlamydomonas reinhardtii, in vivo probing

79

3

H. marismortui 5 S rRNA

122

4

VS ribozyme from Neurospora mitochondria

167

5

R180 ribozyme

178

6*

XS1 ribozyme, Bacillus subtilus P RNA based ribozyme

314

7*

Homo Sapiens RiboNuclease P RNA

342

8

S20 mRNA from E. coli

372

9

Halobacterium cutirubrum RNAse P RNA

375

10

Group II intron ribozyme D135 from Saccharomyces cerevisiae mitochondria

583


Biological structures obtained from the literature and used by Andronescu et al. [9]. The structures marked with an asterisk (*) were obtained from original, pseudoknotted structures by eliminating 8 base pairs in each case to remove the pseudoknot.

Aguirre-Hern├índez et al. BMC Bioinformatics 2007 8:34   doi:10.1186/1471-2105-8-34

Open Data