Table 2

Biological RNA structures.

No.
Description
Size (bases)

1
Minimal catalytic domains of the hairpin ribozyme satellite RNA of the Tobacco ringspot virus
65
2
U3 snoRNA 5' domain from Chlamydomonas reinhardtii, in vivo probing
79
3
H. marismortui 5 S rRNA
122
4
VS ribozyme from Neurospora mitochondria
167
5
R180 ribozyme
178
6*
XS1 ribozyme, Bacillus subtilus P RNA based ribozyme
314
7*
Homo Sapiens RiboNuclease P RNA
342
8
S20 mRNA from E. coli
372
9
Halobacterium cutirubrum RNAse P RNA
375
10
Group II intron ribozyme D135 from Saccharomyces cerevisiae mitochondria
583

Biological structures obtained from the literature and used by Andronescu et al. [9]. The structures marked with an asterisk (*) were obtained from original, pseudoknotted structures by eliminating 8 base pairs in each case to remove the pseudoknot.

Aguirre-Hernández et al. BMC Bioinformatics 2007 8:34   doi:10.1186/1471-2105-8-34