Resolution:
standard / ## Figure 7.
Search cost distribution for the design of structures with primary structure constraints
using RNA-SSD. Distribution of expected run time of RNA-SSD on three structures of approximately
150 bases: RND-150-n85, BIOM-150-n89 and VS ribozyme from Neurospora mitochondria.
The structures were designed with two sets of primary base constraints: one where
the bases are fixed at random positions and another where the bases are fixed on stems
for each structure. Both sets have the same range [a, b] of constrained bases after propagation, where a and b are smallest and largest number of bases constrained if 50% of stems are fixed in
a given structure. We fixed 50% plus one stem when a structure had an odd number of
stems.
Aguirre-Hernández |