Research article
Automatic generation of 3D motifs for classification of protein binding sites
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* Corresponding author: Jean-Christophe Nebel J.Nebel@kingston.ac.uk
1 Faculty of Computing, Information Systems & Mathematics, Kingston University, Kingston-upon-Thames, KT1 2EE, UK
2 Bioinformatics Research Centre, University of Glasgow, Glasgow, G12 8QQ, UK
3 The Sir Henry Wellcome Functional Genomics Facility, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK
BMC Bioinformatics 2007, 8:321 doi:10.1186/1471-2105-8-321
Published: 30 August 2007Additional files
Additional file 1:
Cluster composition. File providing the list of PDB proteins defining each cluster.
Format: XLS Size: 21KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
ADP0. File containing the coordinates and types of atoms belonging to the 3D motif named ADP0. It also includes atoms belonging to the ligand.
Format: PDB Size: 2KB Download file
Additional file 3:
ADP1. File containing the coordinates and types of atoms belonging to the 3D motif named ADP1. It also includes atoms belonging to the ligand.
Format: PDB Size: 1KB Download file
Additional file 4:
ADP2. File containing the coordinates and types of atoms belonging to the 3D motif named ADP2. It also includes atoms belonging to the ligand.
Format: PDB Size: 1KB Download file
Additional file 5:
ADP3. File containing the coordinates and types of atoms belonging to the 3D motif named ADP3. It also includes atoms belonging to the ligand.
Format: PDB Size: 3KB Download file
Additional file 6:
ADP4. File containing the coordinates and types of atoms belonging to the 3D motif named ADP4. It also includes atoms belonging to the ligand.
Format: PDB Size: 2KB Download file
Additional file 7:
ADP5. File containing the coordinates and types of atoms belonging to the 3D motif named ADP5. It also includes atoms belonging to the ligand.
Format: PDB Size: 2KB Download file
Additional file 8:
ADP6. File containing the coordinates and types of atoms belonging to the 3D motif named ADP6. It also includes atoms belonging to the ligand.
Format: PDB Size: 1KB Download file
Additional file 9:
AMP0. File containing the coordinates and types of atoms belonging to the 3D motif named AMP0. It also includes atoms belonging to the ligand.
Format: PDB Size: 3KB Download file
Additional file 10:
ATP0. File containing the coordinates and types of atoms belonging to the 3D motif named ATP0. It also includes atoms belonging to the ligand.
Format: PDB Size: 5KB Download file
Additional file 11:
AxP0. File containing the coordinates and types of atoms belonging to the 3D motif named AxP0. It also includes atoms belonging to the ligand.
Format: PDB Size: 3KB Download file
Additional file 12:
AxP1. File containing the coordinates and types of atoms belonging to the 3D motif named AxP1. It also includes atoms belonging to the ligand.
Format: PDB Size: 3KB Download file
Additional file 13:
AxP2. File containing the coordinates and types of atoms belonging to the 3D motif named AxP2. It also includes atoms belonging to the ligand.
Format: PDB Size: 4KB Download file
Additional file 14:
AxP3. File containing the coordinates and types of atoms belonging to the 3D motif named AxP3. It also includes atoms belonging to the ligand.
Format: PDB Size: 4KB Download file