Figure 3.

Flowcharts of evaluation of similarity detection. A. Reference-dependent, with no consideration of alignment quality. B. Reference-dependent, with the requirement of alignment quality for true positive hits. C. Reference-independent, global mode. D. Reference-independent, local mode.

Qi et al. BMC Bioinformatics 2007 8:314   doi:10.1186/1471-2105-8-314
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