Table 3 |
||||
|
Average correlations between expression levels of genes in a TM and the expression levels of associated TFs. |
||||
|
Factor |
Module |
Module description |
Correlation with module |
P value of correlation |
|
|
||||
|
FKH1 |
1 |
Cell Cycle |
0.53 |
0.001 |
|
MCM1 |
1 |
Cell Cycle |
0.14 |
0.007 |
|
INO4 |
1 |
Cell Cycle |
0.22 |
0.029 |
|
GCN4 |
2 |
Amio Acid Metabolism |
0.09 |
0.539 |
|
CBF1 |
2 |
Amio Acid Metabolism |
0.17 |
0.079 |
|
MET4 |
2 |
Amio Acid Metabolism |
0.00 |
0.497 |
|
INO4 |
2 |
Amio Acid Metabolism |
0.33 |
0.001 |
|
MET31 |
2 |
Amio Acid Metabolism |
-0.14 |
0.789 |
|
SWI4 |
3 |
Cell Cycle |
0.01 |
0.689 |
|
MCM1 |
3 |
Cell Cycle |
0.04 |
0.079 |
|
FKH2 |
3 |
Cell Cycle |
-0.24 |
0.001 |
|
INO4 |
3 |
Cell Cycle |
0.48 |
0.001 |
|
NDD1 |
3 |
Cell Cycle |
0.39 |
0.001 |
|
GLN3 |
4 |
Sporulation |
-0.21 |
0.001 |
|
YFL044C |
4 |
Sporulation |
0.09 |
0.6 |
|
RCS1 |
4 |
Sporulation |
-0.37 |
0.001 |
|
HAP3 |
5 |
Protein Biosynthesis |
0.12 |
0.003 |
|
RCS1 |
5 |
Protein Biosynthesis |
-0.24 |
0.001 |
|
ARG80 |
5 |
Protein Biosynthesis |
0.09 |
0.142 |
|
MBP1 |
6 |
Cell Cycle |
-0.02 |
0.858 |
|
SWI4 |
6 |
Cell Cycle |
0.02 |
0.841 |
|
SKN7 |
6 |
Cell Cycle |
-0.12 |
0.882 |
|
ASH1 |
6 |
Cell Cycle |
0.24 |
0.156 |
|
ACE2 |
6 |
Cell Cycle |
-0.13 |
0.003 |
|
SWI6 |
6 |
Cell Cycle |
0.12 |
0.227 |
|
STB1 |
6 |
Cell Cycle |
0.15 |
0.001 |
|
SUM1 |
7 |
Sporulation |
0.23 |
0.001 |
|
PHO4 |
7 |
Sporulation |
0.39 |
0.001 |
|
MBP1 |
8 |
Cell Cycle |
-0.29 |
0.001 |
|
DOT6 |
8 |
Cell Cycle |
0.16 |
0.001 |
|
SWI4 |
8 |
Cell Cycle |
0.32 |
0.001 |
|
SWI6 |
8 |
Cell Cycle |
0.03 |
0.445 |
|
SUM1 |
9 |
Sporulation |
0.26 |
0.001 |
|
PDR1 |
10 |
Protein Biosynthesis |
-0.18 |
0.001 |
|
MET4 |
10 |
Protein Biosynthesis |
0.06 |
0.001 |
|
RAP1 |
10 |
Protein Biosynthesis |
-0.17 |
0.001 |
|
FHL1 |
10 |
Protein Biosynthesis |
0.04 |
0.001 |
|
|
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|
Liu et al. BMC Bioinformatics 2007 8:283 doi:10.1186/1471-2105-8-283 |
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