Software
Simcluster: clustering enumeration gene expression data on the simplex space
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* Corresponding author: Ricardo ZN Vêncio rvencio@gmail.com
- † Equal contributors
1 Institute for Systems Biology, 1441 North 34th street, Seattle, WA 98103-8904, USA
2 BIOINFO-USP – Núcleo de Pesquisas em Bioinformática, Universidade de São Paulo, São Paulo, Brazil
3 Hospital do Câncer A. C. Camargo, São Paulo, Brazil
BMC Bioinformatics 2007, 8:246 doi:10.1186/1471-2105-8-246
Published: 11 July 2007Additional files
Additional file 1:
Appendix: Aitchisonean distance. Contains an appendix with some background on the usage of the Aitchisonean distance.
Format: PDF Size: 131KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
Stand-alone command-line Simcluster version 0.8.14. Simcluster version used to create results of this work. Note that this version is distributed for compatibility issues only and users should always obtain the latest version at the project's website: http://xerad.systemsbiology.net/simcluster webcite.
Format: ZIP Size: 948KB Download file
Additional file 3:
Simulation data, results and scripts. Contains the script that generated the virtual transcript enumeration data, the dataset used as the basis for the analysis, the results from it, and the conclusions for all tested samples sizes n from 100,000 to 100,000,000.
Format: ZIP Size: 9.3MB Download file