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Open Access Correction

Correction: Splice site identification using probabilistic parameters and SVM classification

AKMA Baten*, BCH Chang, SK Halgamuge and Jason Li

Author Affiliations

Dynamic Systems and Control Research Group, DoMME, The University of Melbourne, Victoria 3010, Australia

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BMC Bioinformatics 2007, 8:241  doi:10.1186/1471-2105-8-241


The electronic version of this article is the complete one and can be found online at: http://www.biomedcentral.com/1471-2105/8/241


Received:5 July 2007
Accepted:5 July 2007
Published:5 July 2007

© 2007 Baten et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Correction

We proposed a method for the identification of splice sites [1] and it was tested against two data sets – DGSplicer (402695 acceptor and 285451 donor sites) and NN269 (6876 acceptor and 6316 donor sites).

The better performance on the bigger data set (DGSplicer) supports our claim about the validity of the proposed method. However, after the publication of this work it was brought to our attention that the results associated with the smaller dataset (NN269) in our paper were incorrectly scaled in the x-axis. The correct result generated by our proposed method (MM1-SVM) for this dataset is given in Figure 1 and Figure 2 below. This affects the results of Figures 2, 3, 4 and 5 of our original paper and Figures 1 and 2 in the additional file of the paper.

thumbnailFigure 1. ROC showing the performance of MM1-SVM on NN269 acceptor splice site test data.

thumbnailFigure 2. ROC showing the performance of MM1-SVM on NN269 donor splice site test data.

We regret any inconvenience caused by this incident and we would like to thank Dr. Gunnar Rätsch and Dr. Soeren Sonnenburg from Max Planck Society for bringing this error to our attention.

References

  1. Baten AKMA, Chang BCH, Halgamuge SK, Li J: Splice site identification using probabilistic parameters and SVM classification.

    BMC Bioinformatics 2006., 7 PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL