Table 1

Performances of the template-based secondary structure predictor (Porter_H) compared with a baseline predictor which copies the secondary structure of the best template (baseline) and with the ab initio secondary structure predictor (Porter).

maxID

baseline

Porter_H

Porter


95%

86.2%

88.3%

79.6%

30%

77.6%

83.7%

80.2%

20%

73.1%

82.4%

80.5%


Templates up to 95%, 30% and 20% maximum similarity allowed (maxID) for baseline and Porter_H. Performances measured only on residues for which a template has been identified. Results in 5-fold cross-validation on the S2171 set (see text for details).

Pollastri et al. BMC Bioinformatics 2007 8:201   doi:10.1186/1471-2105-8-201

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