Table 2 |
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|
Conditional entropies and their significances for isochore segmentations with 114 segments |
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|
P |
H (T|P) |
pℓ |
pk |
H (P|T) |
pℓ |
pk |
|
|
||||||
|
Lgc |
0.740 |
0 |
0 |
0.683 |
0 |
0 |
|
L2 |
0.688 |
0 |
0 |
0.771 |
0 |
0 |
|
L1 |
0.750 |
0 |
0 |
0.778 |
0 |
0 |
|
LA |
0.937 |
0.0352 |
0.0389 |
0.876 |
0.0010 |
0.0090 |
|
LC |
0.797 |
0 |
0 |
0.684 |
0 |
0 |
|
LG |
0.836 |
0.0002 |
0.0004 |
0.821 |
0.0001 |
0.0005 |
|
LT |
0.984 |
0.1758 |
0.1748 |
0.840 |
0.0002 |
0.0010 |
|
|
||||||
|
Conditional entropies and entropy distances for segmentations on isochore structure,
for the ground truth segmentation from [20] with k = 114. Lf: least-squares segmentation with features f; f ∈ {gc, 2, 1, A, C, G, T} indicate frequencies of G+C, 2-letter words, 1-letter words, and frequency of A,
C, G, or T, respectively, pℓ: the fraction of segmentations from |
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|
Haiminen et al. BMC Bioinformatics 2007 8:171 doi:10.1186/1471-2105-8-171 |
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