Table 3

Significance of the TF-map alignment scores

S

Promoter

Coding

5'UTR

3'UTR

Intronic

Downstream

5'Intergenic

3'Intergenic

PPPS

25.41

10.06

7.43

5.36

10.54

10.84

10.84

10.77

PPSS

25.41

9.79

5.03

5.24

7.50

6.31

4.98

5.61

P_HS_R

42.00

5.80

5.04

2.49

4.57

5.79

4.64

3.63

Average score of multiple TF-map alignments of groups constituted of orthologous promoters from the HRCZ SET (denoted as P), introducing one or two non-corresponding orthologous sequences (denoted as S). Last row shows the average score of pairwise TF-map alignments that involve each human promoter (P_H) and the corresponding rodent region of the same gene (S_R) in the HRCZ SET.

Blanco et al. BMC Bioinformatics 2007 8:138   doi:10.1186/1471-2105-8-138