Table 2

Test data set analysis.

2+ SRRs

3+ SRRs


Loose Repeat Threshold

Loose Repeat Threshold


Total Proteins

SRR Proteins

Total

True positives

False positives

Total

True positives

False positives


5000

250

342

250 (100%)

92

248

248 (99.2%)

0

5000

1250

1306

1250 (100%)

56

1237

1237 (99.0%)

0

10000

500

674

500 (100%)

174

492

492 (98.4%)

0

10000

2500

2633

2500 (100%)

133

2466

2466 (98.6%)

0


Normal Repeat Threshold

Normal Repeat Threshold


Total Proteins

SRR Proteins

Total

True positives

False positives

Total

True positives

False positives


5000

250

256

250 (100%)

6

248

248 (99.2%)

0

5000

1250

1253

1248 (99.8%)

5

1237

1237 (99.0%)

0

10000

500

506

499 (99.8 %)

7

492

492 (98.4%)

0

10000

2500

2504

2496 (99.8%)

8

2466

2466 (98.6%)

0


Strict Repeat Threshold

Strict Repeat Threshold


Total Proteins

SRR Proteins

Total

True positives

False positives

Total

True positives

False positives


5000

250

245

245 (98.0%)

0

244

244 (97.6%)

0

5000

1250

1220

1220 (97.6%)

0

1219

1219 (97.5%)

0

10000

500

485

485 (97.0%)

0

484

484 (96.8%)

0

10000

2500

2424

2424 (97.0%)

0

2420

2420 (96.8%)

0


Proteomes containing 5000 or 10000 proteins (5% or 25% of which contained repeat regions) were created and analysed using RepSeq.

Depledge et al. BMC Bioinformatics 2007 8:122   doi:10.1186/1471-2105-8-122

Open Data