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Comparison of PSI-BLAST and RankProp variants. The table lists ROC1, ROC10 and ROC50 scores, averaged across 2899 SCOP domains in the test set, for PSI-BLAST and five variants of the RankProp algorithm. |
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| ROC1 |
ROC10 |
ROC50 |
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|
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| PSI-BLAST |
0.5973 |
0.6167 |
0.6406 |
| RankProp σ = 10 |
0.5964 |
0.6658 |
0.7169 |
| RankProp σ = 100 |
0.5924 |
0.6671 |
0.7249 |
| RankProp σ = 1000 |
0.6040 |
0.6661 |
0.6999 |
| Probabilistic RankProp |
0.6145 |
0.6660 |
0.7195 |
| Adaptive RankProp |
0.6510 |
0.7000 |
0.7420 |
Weston et al. BMC Bioinformatics 2006 7(Suppl 1):S10 doi:10.1186/1471-2105-7-S1-S10 |
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