|
Cross-validated density prediction accuracy of NBDP models. Average KL divergence for the Naive Bayes' Density Predictor is shown for the 3- and 8-class prediction tasks with varying sequence window sizes. The residues in the window were described using the amino acid identity method. All predictions are for 10-fold cross-validation on the training set (set-174). Best results are shown in bold. |
||
| window size |
3-class accuracy |
8-class accuracy |
|
|
||
| 5 |
0.77 |
1.20 |
| 7 |
0.75 |
1.19 |
| 9 |
0.75 |
1.19 |
| 11 |
0.74 |
1.20 |
| 13 |
0.75 |
1.22 |
| 15 |
0.76 |
1.25 |
| 17 |
0.78 |
1.28 |
| 19 |
0.79 |
1.31 |
Bodén et al. BMC Bioinformatics 2006 7:68 doi:10.1186/1471-2105-7-68 |
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