Table 2

Accuracy results on chromosome 22

chr22

base

exon

gene

sn

sp

sn

sp

sn

sp


AUGUSTUS

0.85

0.59

0.71

0.52

0.19

0.09

GENSCAN

0.89

0.49

0.73

0.39

0.10

0.05


AUGUSTUS+

EST

0.90

0.63

0.80

0.58

0.25

0.12

Protein

0.94

0.65

0.87

0.63

0.37

0.19

Combined

0.91

0.65

0.81

0.61

0.30

0.15

all hints

0.94

0.68

0.89

0.66

0.41

0.22


TWINSCAN

0.85

0.65

0.76

0.58

0.14

0.10

SGP2

0.87

0.66

0.74

0.56

0.19

0.10


Accuracy results on human chromosome 22 using the annotation of the Sanger Center as a standard of truth. The results were computed using the program Eval from Evan Keibler and Michael R. Brent. The TWINSCAN and the SGP2 predictions were taken from [28] and [29]. The AUGUSTUS predictions can be downloaded from the AUGUSTUS web server [27]

Stanke et al. BMC Bioinformatics 2006 7:62   doi:10.1186/1471-2105-7-62

Open Data