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Correlations in HCC. In this table are listed some terms for which there is a significant number of relations in cancer but not in normal tissues. The table presents: in the first column, the name of the GO term; in the second (Pairs HCC) the number of correlations present in the cancer samples; in the third (Pairs LIV), the number of correlations found in the normal tissues. For each GO term, we report the mean and the standard deviation as computed by bootstrap analysis, as described in "Methods" Section. |
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| Gene Ontology term |
Pairs HCC mean(stdev) |
Pairs LIV mean(stdev) |
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| antigen presentation, endogenous antigen |
2 0(0) |
0 0(0) |
| blood coagulation |
12 1.05(1.05) |
2 1.3(1.3) |
| DNA replication |
18 1.45(1.8) |
2 1.45(1.4) |
| regulation of translational initiation |
2 0.05(0.22) |
1 0.25 (0.44) |
| DNA replication initiation |
2 0.05(0.22) |
0 0(0) |
| antigen processing, endogenous antigen via MHC class I |
2 0.05(0.22) |
0 0(0) |
| metabolism |
33 9.45(3.4) |
10 8.95(4.0) |
| cell cycle arrest |
4 0.45(0.51) |
0 1.15(2.0) |
| negative regulation of cell proliferation |
10 1.95(1.3) |
2 2.25(2.3) |
| chromatin remodeling |
2 0.1(0.31) |
0 0.15(0.37) |
| mitosis |
6 0.7(0.86) |
0 1(0.79) |
| heterophilic cell adhesion |
3 0.15(0.49) |
0 0.35(0.67) |
| cytokinesis |
7 1.15(1.1) |
0 1(1.1) |
| positive regulation of cell proliferation |
4 0.7(0.66) |
1 0.95(1.1) |
| cell adhesion |
17 7.8(1.9) |
3 11.4(5.6) |
| cholesterol metabolism |
2 0.2(0.41) |
0 0.25(0.72) |
| lipid transport |
3 0.35(0.67) |
0 0.45(0.69) |
| cell cycle |
10 2.2(2.2) |
5 2.3(2.2) |
| proteolysis and peptidolysis |
14 4.15(2.9) |
4 4.45(3.3) |
| protein complex assembly |
5 0.95(1.3) |
2 1.3(2.1) |
| antimicrobial humoral response (sensu Vertebrata) |
3 0.3(0.92) |
1 0.55(0.83) |
| cell motility |
8 1.8(2.3) |
4 1.65(1.6) |
| fatty acid metabolism |
3 0.65(0.99) |
1 0.55(0.94) |
Gamberoni et al. BMC Bioinformatics 2006 7:6 doi:10.1186/1471-2105-7-6 |
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