Figure 5.

Accuracies of best costs plotted by divergence. I, IA, and IL are the alignment identities produced by the best log-affine, affine, and logarithmic gap penalties, respectively. See Figure 3 for more information. a-c) Alignment identities plotted by the branch length of the alignments. Divergence time is plotted on a uniform scale, u = 1 - exp (-t/

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). d-f) Box-whisker plots of identities grouped into 20 bins of 250 values. Solid bars are medians. Notches are significant range of medians. Bars are the mid-range. Whiskers are the range. Circles are outliers.

Cartwright BMC Bioinformatics 2006 7:527   doi:10.1186/1471-2105-7-527
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