|
Predictive results obtained by using various similarity definitions for proteins |
||||
| Similarity Definition |
MAX |
AVG |
SUM |
AVG_BestPairs |
|
|
||||
| Compartment |
MCC (Accuracy %) |
|||
|
|
||||
| PML BODY |
0.189 (28.9) |
0.153 (34.2) |
0.129 (76.3) |
-0.031 (0.0) |
| Nuclear Lamina |
0.344 (45.5) |
0.535 (63.6) |
0.455 (45.5) |
0.315 (61.8) |
| Nuclear Splicing Speckles |
0.377 (35.7) |
0.251 (71.4) |
0.289 (33.9) |
0.013 (12.5) |
| Chromatin |
0.236 (19.7) |
0.218 (16.4) |
0.112 (4.9) |
0.142 (8.2) |
| Nucleoplasm |
0.272 (29.3) |
0.039 (9.3) |
-0.079 (4.0) |
0.118 (6.7) |
| Nucleolus |
0.367 (75.8) |
0.431 (44.7) |
0.214 (26.0) |
0.289 (75.3) |
| Overall for Single-localization |
0.298 (50.8) |
0.271 (40.3) |
0.187 (27.0) |
0.141 (42.9) |
|
|
||||
| Similarity Definition |
SUM_BestPairs |
AVG_Match |
SUM_Match |
MAX_Match |
|
|
||||
| Compartment |
MCC (Accuracy %) |
|||
|
|
||||
| PML BODY |
0.242 (44.7) |
0.187 (34.2) |
0.253 (34.2) |
0.211 (31.6) |
| Nuclear Lamina |
0.53 (67.3) |
0.586 (60.0) |
0.578 (63.6) |
0.344 (45.5) |
| Nuclear Splicing Speckles |
0.438 (46.4) |
0.397 (66.1) |
0.607 (62.5) |
0.487 (46.4) |
| Chromatin |
0.325 (36.1) |
0.467 (45.9) |
0.518 (60.7) |
0.263 (21.3) |
| Nucleoplasm |
0.284 (36.0) |
0.332 (32.0) |
0.504 (56.0) |
0.298 (32.0) |
| Nucleolus |
0.512 (66.7) |
0.615 (72.6) |
0.656 (79.0) |
0.407 (76.7) |
| Overall for Single-localization |
0.388 (54.6) |
0.431 (58.3) |
0.519 (66.5) |
0.335 (53.2) |
|
(Based on SimLP: The GO term similarity is defined on the longest path shared by two GO terms [22].) | ||||
Lei and Dai BMC Bioinformatics 2006 7:491 doi:10.1186/1471-2105-7-491 |
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