Table 1 |
|||||
|
Gene overlap between HM200 and published cancer marker gene lists. |
|||||
|
List 1 |
List 2 |
Overlap |
Size of list 1 |
Size of list 2 |
pseudo-p-value |
|
|
|||||
|
HM200 |
Pomeroy-400 |
27 |
200 |
305 |
1.04E-15 |
|
HM200 |
Pomeroy-1 |
9 |
200 |
103 |
5.41E-06 |
|
HM200 |
GDS1070 |
5 |
200 |
82 |
3.55E-03 |
|
HM200 |
NC01-2000 |
0 |
200 |
420 |
1.13E-02 |
|
HM200 |
GDS232 |
4 |
200 |
82 |
1.91E-02 |
|
HM200 |
NuttGBM |
3 |
200 |
50 |
2.42E-02 |
|
HM200 |
vantVeer2002 |
4 |
200 |
93 |
2.87E-02 |
|
HM200 |
Pomeroy-3 |
4 |
200 |
95 |
3.07E-02 |
|
HM200 |
Perou-Brown-Botstein1999 |
2 |
200 |
31 |
5.65E-02 |
|
HM200 |
Pomeroy-2 |
4 |
200 |
132 |
8.25E-02 |
|
HM200 |
Rhodes2004 |
2 |
200 |
57 |
1.58E-01 |
|
HM200 |
GDS183 |
1 |
200 |
28 |
2.96E-01 |
|
HM200 |
Pomeroy-0 |
3 |
200 |
166 |
4.65E-01 |
|
HM200 |
NuttAO |
1 |
200 |
76 |
6.14E-01 |
|
HM200 |
Pomeroy-4 |
0 |
200 |
92 |
6.33E-01 |
|
|
|||||
|
Campagne and Skrabanek BMC Bioinformatics 2006 7:481 doi:10.1186/1471-2105-7-481 |
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