|
Overlap with PhastCons and MAGE genes |
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| Overlap with TSS of MAGE genes |
% of overlap with |
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|
|
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| Program |
#CGI |
Average length ± SD |
Alus |
PhastCons |
|
|
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| newcpgreport |
2 |
271.0 ± 18.4 |
19.49 |
23.73 |
| CpGProD |
3 |
1,314.3 ± 525.1 |
23.40 |
13.31 |
| CpGIS |
3 |
800.0 ± 243.3 |
10.52 |
20.59 |
| CpGIE |
3 |
1,093.0 ± 476.1 |
23.99 |
14.00 |
| CpGED |
2 |
730.5 ± 320.3 |
15.32 |
15.82 |
| CpGcluster |
8 |
258.3 ± 100.8 |
6.79 |
28.53 |
|
Predicted CpG islands in 10 MAGE genes (left part) and percentage of overlap between the CpG-islands predicted in the human chromosome 22 and both Alu retrotransposons and PhastCons (evolutionarily conserved elements). | ||||
Hackenberg et al. BMC Bioinformatics 2006 7:446 doi:10.1186/1471-2105-7-446 |
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