|
Comparison of GOLEM with other gene ontology navigation and analysis tools. |
||||||||
| Availability |
Finds statistically enriched GO terms |
Supports gene-based queries |
Visualization As Tree |
Visualization As DAG |
Visualization As Interactively Expandable DAG |
Accepts Local Annotations Files |
Requires Internet Connection |
|
|
|
||||||||
| AmiGO |
Freely available; HTML-based application |
No |
Yes |
Yes |
Yes |
No |
No |
Yes |
| Gene InfoViz |
Freely available; web-based application |
No |
Yes |
No |
Yes |
No |
No |
Yes |
| GOFish |
Freely available; Java applet |
No |
Yes |
Yes |
No |
No |
No |
Yes |
| FatiGO |
Freely available; web-based application |
Yes |
Yes |
No |
No |
No |
No |
Yes |
| GO Term Finder |
Freely available; yeast-only web-based version, downloadable generic version |
Yes |
Yes |
Yes |
Yes |
No |
No |
Yes |
| TO-GO |
Freely available; Java application |
No |
Yes |
Yes |
No |
No |
Yes |
Yes (at program startup only) |
| DynGO |
Freely available; standalone Java package |
No |
Yes |
Yes |
No |
No |
Yes |
No |
| GenNav |
Freely available; web-based application |
No |
Yes |
No |
Yes |
No |
No |
Yes |
| GoMiner |
Freely available; Java application |
Yes |
Yes |
Yes |
Yes |
No |
Yes |
No |
| GOLEM |
Freely available; application version, applet version |
Yes |
Yes |
No |
Yes |
Yes |
Yes |
No |
Sealfon et al. BMC Bioinformatics 2006 7:443 doi:10.1186/1471-2105-7-443 |
||||||||