Table 1

Comparison of GOLEM with other gene ontology navigation and analysis tools.

Availability

Finds statistically enriched GO terms

Supports gene-based queries

Visualization As Tree

Visualization As DAG

Visualization As Interactively Expandable DAG

Accepts Local Annotations Files

Requires Internet Connection


AmiGO

Freely available; HTML-based application

No

Yes

Yes

Yes

No

No

Yes

Gene InfoViz

Freely available; web-based application

No

Yes

No

Yes

No

No

Yes

GOFish

Freely available; Java applet

No

Yes

Yes

No

No

No

Yes

FatiGO

Freely available; web-based application

Yes

Yes

No

No

No

No

Yes

GO Term Finder

Freely available; yeast-only web-based version, downloadable generic version

Yes

Yes

Yes

Yes

No

No

Yes

TO-GO

Freely available; Java application

No

Yes

Yes

No

No

Yes

Yes (at program startup only)

DynGO

Freely available; standalone Java package

No

Yes

Yes

No

No

Yes

No

GenNav

Freely available; web-based application

No

Yes

No

Yes

No

No

Yes

GoMiner

Freely available; Java application

Yes

Yes

Yes

Yes

No

Yes

No

GOLEM

Freely available; application version, applet version

Yes

Yes

No

Yes

Yes

Yes

No


Sealfon et al. BMC Bioinformatics 2006 7:443   doi:10.1186/1471-2105-7-443

Open Data