Table 1 |
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|
Comparison of GOLEM with other gene ontology navigation and analysis tools. |
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|
Availability |
Finds statistically enriched GO terms |
Supports gene-based queries |
Visualization As Tree |
Visualization As DAG |
Visualization As Interactively Expandable DAG |
Accepts Local Annotations Files |
Requires Internet Connection |
|
|
|
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|
AmiGO |
Freely available; HTML-based application |
No |
Yes |
Yes |
Yes |
No |
No |
Yes |
|
Gene InfoViz |
Freely available; web-based application |
No |
Yes |
No |
Yes |
No |
No |
Yes |
|
GOFish |
Freely available; Java applet |
No |
Yes |
Yes |
No |
No |
No |
Yes |
|
FatiGO |
Freely available; web-based application |
Yes |
Yes |
No |
No |
No |
No |
Yes |
|
GO Term Finder |
Freely available; yeast-only web-based version, downloadable generic version |
Yes |
Yes |
Yes |
Yes |
No |
No |
Yes |
|
TO-GO |
Freely available; Java application |
No |
Yes |
Yes |
No |
No |
Yes |
Yes (at program startup only) |
|
DynGO |
Freely available; standalone Java package |
No |
Yes |
Yes |
No |
No |
Yes |
No |
|
GenNav |
Freely available; web-based application |
No |
Yes |
No |
Yes |
No |
No |
Yes |
|
GoMiner |
Freely available; Java application |
Yes |
Yes |
Yes |
Yes |
No |
Yes |
No |
|
GOLEM |
Freely available; application version, applet version |
Yes |
Yes |
No |
Yes |
Yes |
Yes |
No |
|
|
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|
Sealfon et al. BMC Bioinformatics 2006 7:443 doi:10.1186/1471-2105-7-443 |
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