Table 1

Performance of NER Systems

Token-level

Field-level

precis.

recall

F1

precis.

recall

F1


development set


likely-protein

0.816

0.313

0.452

0.667

0.268

0.382

possible-protein

0.439

0.885

0.587

0.304

0.566

0.396

dictionary

0.501

0.469

0.484

0.245

0.439

0.314


YAPEX test


likely-protein

0.949

0.648

0.770

0.872

0.621

0.725

possible-protein

0.490

0.974

0.652

0.472

0.825

0.600

YAPEX system

0.678

0.664

0.671


Performance of the NER systems on the mouse development corpus and the YAPEX test corpus. The row labeled "dictionary" is for simple dictionary lookup using the mouse synonym list. The row labeled "YAPEX system" is from [15].

Cohen and Minkov BMC Bioinformatics 2006 7:440   doi:10.1186/1471-2105-7-440

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