Table 5

Combinations of GO attributes selected for the dataset of Spellman et al. [24]. Starting with the highest scoring attribute 'cytosolicribosome'. new attributes were iteratively included until kmax = 31, the first, 20 are given here. Note that the results do not depend specifically on which of the datasets was used: GO IDs that have been selected among the top 32 for all datasets listed in Table 2 are indicated in bold. The clustering was the same as considered above, see caption of Fig. 2 for details. Note that neither of the attributes is dedicatedly related to the cell cycle, except 'cell cycle' and 'mitosis', which were likewise found for all of the considered datasets.

rank k

GO ID

description


0

GO:0005830

cytosolic ribosome (sensu Eukaryota)

1

GO:0005737

cytoplasm

2

GO:0007049

cell cycle

3

GO:0005634

nucleus

4

GO:0003824

catalytic activity

5

GO:0006411

protein metabolism

6

GO:0016043

cell organization and biogenesis

7

GO:0008152

metabolism

8

GO:0003676

nucleic acid binding

9

GO:0016020

membrane

10

GO:0007275

development

11

GO:0009058

biosynthesis

12

GO:0008151

cell growth and/or maintenance

13

GO:0005215

transporter activity

14

GO:0005739

mitochondrion

15

GO:0006259

DNA metabolism

16

GO:0009056

catabolism

17

G0:0006519

amino acid and derivative metabolism

18

GO:0005975

carbohydrate metabolism

19

GO:0007067

mitosis

20

GO:0005488

binding


Steuer et al. BMC Bioinformatics 2006 7:380   doi:10.1186/1471-2105-7-380

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