Table 6

The 126 genes contributing the most to the ethanol signature as defined by the maximum curvature in Figure 13 A.

Gene Name

Rank

Expression Ratio

Gene Name

Rank

Expression Ratio

Gene Name

Rank

Expression Ratio


yaiD

1

298.3

uidR

43

31.2

yagR

85

5.7

argH

2

170.0

hcaR

44

60.6

mtlA

86

2.3

mngA

3

85.6

yciQ

45

1.4

ydhS

87

2.7

plsC

4

76.9

nagC

46

4.1

ybgH

88

3.7

caiA

5

300.3

yqcD

47

4.3

ygfZ

89

3.5

yebU

6

51.6

ynfA

48

1.8

aat

90

8.7

ylbF

7

29.9

glvC

49

3.2

speD

91

1.7

nrfG

8

46.8

yiaL

50

14.0

yagZ

92

6.2

yaiY

9

27.6

dbpA

51

2.3

yaeQ

93

1.6

pnp

10

4.9

ydhB

52

14.3

uhpT

94

9.4

mepA

11

10.5

grxB

53

2.1

yidF

95

12.1

amtB

12

3.7

hnr

54

4.9

ydiF

96

2.0

xthA

13

22.6

cbl

55

46.8

ydiU

97

2.0

ybfL

14

5.0

hemX

56

2.2

yhaM

98

22.2

moaE

15

2.7

fliG

57

30.3

ycgE

99

8.4

fdrA

16

10.0

yhaJ

58

14.3

ycdJ

100

3.4

topB

17

2.9

ydaP

59

9.3

ydfE

101

3.6

nlpC

18

9.6

tolB

60

2.1

yfcD

102

7.3

yagX

19

2.1

yagB

61

4.8

ytfM

103

2.0

ydcK

20

21.8

livJ

62

1.9

ylbC

104

3.9

yhfR

21

18.3

ybgI

63

2.4

rstA

105

7.3

fliF

22

58.3

tus

64

10.5

ycdI

106

6.5

zipA

23

4.4

uvrY

65

4.9

sfcA

107

7.5

ybhD

24

29.9

yhhX

66

8.2

ynjH

108

1.9

fhuA

25

3.8

sgbU

67

5.7

ybjN

109

11.8

ycfX

26

52.4

ydfP

68

3.2

ynfC

110

2.9

xerC

27

5.7

lysR

69

7.6

yidP

111

29.8

yheH

28

4.4

yneB

70

6.5

ybfO

112

2.1

wzzB

29

4.1

tktB

71

3.2

ydcI

113

34.6

yeeY

30

25.2

yhiP

72

3.1

ybdL

114

3.0

yiaJ

31

18.3

yidL

73

6.8

yggF

115

13.5

uvrC

32

2.2

yfeA

74

8.2

gcvA

116

3.0

ychA

33

16.9

yjcZ

75

3.3

yibN

117

3.6

hyfD

34

2.7

ycbX

76

5.3

cpsB

118

2.4

kdgR

35

3.6

yhcP

77

2.2

nagA

119

3.4

ydfU

36

2.57

recX

78

36.5

mhpB

120

19.8

yfeR

37

46.5

nanR

79

5.5

livK

121

6.9

parC

38

2.5

yccU

80

2.1

mnmE

122

1.7

yhiI

39

12.2

hyuA

81

6.2

fes

123

3.9

ygbI

40

38.1

nadB

82

1.7

pspF

124

3.4

ypdC

41

29.9

yaeJ

83

2.4

ygcP

125

83.3

yeiQ

42

13.5

ybhS

84

3.9

intA

126

2.5


Expression ratios are defined as the average expression level of a gene in the 4 ethanol-challenged cultures divided by the average expression level in the 8 cultures not exposed to ethanol.

Rollins et al. BMC Bioinformatics 2006 7:377   doi:10.1186/1471-2105-7-377

Open Data