BMC Bioinformatics

official impact factor 3.03
Search for
Advanced search
BMC Bioinformatics
Tools
Share this article
Open Access Research article

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments

Daniel A Pollard1, Alan M Moses1, Venky N Iyer2 and Michael B Eisen1,2,3,4*

Author Affiliations

1 Graduate Group in Biophysics, University of California, Berkeley, CA 94720, USA

2 Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA

3 Department of Genome Sciences, Genomics Division, Ernest Orlando Lawrence Berkeley National Lab, Berkeley, CA 94720, USA

4 Center for Integrative Genomics, University of California, Berkeley, CA 94720, USA

For all author emails, please log on.

BMC Bioinformatics 2006, 7:376 doi:10.1186/1471-2105-7-376

Published: 14 August 2006

Additional files

Additional File 1:

This file, in GFF2 format [91], contains the coordinates of the 36 enhancers used in this study in Drosophila melanogaster release 4 coordinates [92].

Format: GFF Size: 5KB Download file

Open Data

Additional File 2:

This text file contains horizontal counts matrices and vertical frequency matrices for each of the eight transcription factors used in this study.

Format: TXT Size: 4KB Download file

Open Data