Table 1 |
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|
Relative distribution of homo repeats (tandem or scattered) of size <10 (occurring one or more times) and ≥10 (occurring more than once). The figures within round brackets represent the number of homo repeat proteins of corresponding amino acid and organism. The figures within square brackets represent percentage of homo repeat proteins of corresponding amino acid and organism, to that of all the homo repeat proteins in the organism. |
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|
Amino Acid |
Proteins with homo repeats of size <10 |
Proteins with homo repeats of size ≥10 |
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|
|
|
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|
1st |
2nd |
3rd |
4th |
5th |
1st |
2nd |
3rd |
||
|
|
|
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|
Acidic (Polar) |
D |
Sce(94) [13.33] |
Pfa(270) [11.56] |
Ncr(280) [9.18] |
Dre(81) [8.7] |
Ara(395) [7.7] |
Sce(3) [0.43] |
Pfa(6) [0.44] |
Ara(3) [0.39] |
|
E |
Hsa(996) [21.95] |
Mus(761) [20.35] |
Dre(187) [20.08] |
Rat(654) [19.53] |
Spo(53) [15.54] |
Mus(28) [4.11] |
Hsa(25) [2.43] |
Rat(9) [1.48] |
|
|
Basic (Polar) |
R |
Osa(545) [12.5] |
Sav(48) [11.11] |
Sco(44) [10.06] |
Rat(161) [4.81] |
Mus(151) [4.03] |
Mus(1) [0.15] |
-- |
-- |
|
K |
Pfa(1100) [47.11] |
Lin(12) [19.6] |
Spo(37) [10.8] |
Dre(92) [9.88] |
Sce(59) [8.37] |
Ara(1) [1.43] |
Ncr(3) [0.56] |
Pfa(2) [0.14] |
|
|
H |
Ano(153) [6.28] |
Dme(282) [6.06] |
Ncr(75) [2.87] |
Cel(68) [2.69] |
Ara(135) [2.63] |
-- |
-- |
-- |
|
|
Polar |
S |
Lpl(25) [36.23] |
Ara(1742) [33.99] |
Spo(112) [32.84] |
Sce(194) [27.52] |
Dre(221) 23.73] |
Hsa(20) [1.94] |
Mus(9) [1.32] |
Dme(14) [0.76] |
|
T |
Lpl(14) [20.28] |
Cel(307) [12.15] |
Ncr(316) [12.09] |
Dme(516) [11.11] |
Ano(235) [9.65] |
Dme(6) [0.33] |
Ano(2) [0.35] |
Rat(1) [0.16] |
|
|
N |
Pfa(1675) [71.73] |
Sce(88) [12.48] |
Dme(465) [9.99] |
Ncr(146) [5.58] |
Ara(234) [4.56] |
Pfa(280) [20.29] |
Ncr(8) [1.49] |
Dme(2) [0.11] |
|
|
Q |
Dme(1582) [34.01] |
Lma(25) [31.6] |
Ano(576) [23.65] |
Ncr(525) [20.09] |
Sce(129) [18.30] |
Dme(131) [7.12] |
Ncr(34) [6.34] |
Hsa(43) [4.18] |
|
|
C |
Mus(25) [0.66] |
Dre(6) [0.64] |
Rat(21) [0.62] |
Ano(11) [0.45] |
Hsa(21) [0.44] |
-- |
-- |
-- |
|
|
Y |
Pfa(30) [1.28] |
Ype(1) [1.23] |
Cel(7) [0.27] |
Ano(3) [0.12] |
Osa(5) [0.11] |
-- |
-- |
-- |
|
|
Non-polar |
G |
Osa(1294) [26.69] |
Ano(601) [24.68] |
Dme(957) [20.57] |
Ncr(454) [17.38] |
Mbo(47) [15.87] |
Ara(11) [1.43] |
Has(10) [0.97] |
Dme(8) [0.44] |
|
A |
Mbo(191) [64.52] |
Sav(222) [51.38] |
Sco(223) [51.02] |
Osa(1520) [34.87] |
Dme(1209) [25.98] |
Dme(34) [1.85] |
Mus(10) [1.47] |
Hsa(11) [1.07] |
|
|
V |
Osa(79) [1.89] |
Ano(29) [1.19] |
Rat(35) [1.04] |
Ara(53) [1.03] |
Cel(23) [0.91] |
Rat(1) [0.10] |
-- |
-- |
|
|
L |
Tth(48) [49.48] |
Dra(49) [42.61] |
Pae(49) [32.23] |
Rat(662) [19.77] |
Hsa(860) [18.26] |
Xfa(1) [9.09] |
Ano(1) [0.18] |
-- |
|
|
I |
Sto(7) [12.72] |
Pfa(18) [0.77] |
Dre(7) [0.75] |
Mus(26) [0.69] |
Cel(14) [0.55] |
-- |
-- |
-- |
|
|
P |
Hsa(851) [18.07] |
Osa(712) [16.33] |
Mus(608) [16.21] |
Cel(394) [15.59] |
Rat(506) [15.11] |
Ara(10) [1.30] |
Has(13) [1.26] |
Mus(4) [0.59] |
|
|
M |
Ara(16) [0.33] |
Dre(3) [0.32] |
Pfa(5) [0.21] |
Ano(5) [0.20] |
Ncr(3) [0.11] |
Ara(1) [0.13] |
-- |
-- |
|
|
F |
Pfa(65) [2.78] |
Ara(43) [0.83] |
Cel(19) [0.75] |
Mus(23) [0.61] |
Osa(16) [0.37] |
Mus(1) [0.15] |
Osa(1) [0.13] |
-- |
|
|
W |
Ano(3) [0.12] |
Osa(3) [0.06] |
Ncr(1) [0.03] |
-- |
-- |
-- |
-- |
-- |
|
|
|
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|
Note: Ano: Anophelis gambiae; Ara: Arabidopsis thaliana; Cel: Caenorhabditis elegans; Dre: Danio rerio; Dra: Deinococcus radiodurans; Dme: Drosophila melanogastor; Hsa: Homo sapiens; Lpl: Lactobacillus plantarum; Lma: Leishmania major; Lin: Leptospira interrogans; Mus: Mus musculus; Mbo: Mycobacterium bovis; Ncr: Neurospora crassa; Osa: Oryza sativa; Pfa: Plasmodium falciparum; Pae: Pseudomonas aeruginosa, Rat: Rattus norvegicus; Sce: Saccharomyces cerevisiae; Spo: Schizosaccharomyces pombe; Sav: Streptomyces avermitilis; Sco: Streptomyces coelicolor; Sto: Sulfolobus tokodaii; Tth: Thermus thermophilus; Ype: Yersinia pestis; Xfa: Xylella fastidiosa |
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|
Kalita et al. BMC Bioinformatics 2006 7:336 doi:10.1186/1471-2105-7-336 |
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