Table 3

Performance evaluation using simulated palindromic TFBS. Performance comparison of OMiMa (1-L-0) with PWM, 1stMM, and PVLMM (order 1 and depth 1) for predicting two simulated TFBS A and B. The performance was measured as the maximum Mc achieved by each model.

Motif

PWM

1stMM

PVLMM

OMiMa


A

0.306

0.414

0.807

0.914

B

0.253

0.428

0.647

0.794


Huang et al. BMC Bioinformatics 2006 7:279   doi:10.1186/1471-2105-7-279

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