Table 1

Taxa currently included in PhIGs

Species

Taxonomy

Genome source

URL

Homo sapiens

Primates

Ensembl 22.34d.1

http://www.ensembl.org webcite

Pan troglodytes

Primates

Ensembl 22.1.1

http://www.ensembl.org webcite

Mus musculus

Rodentia

Ensembl 22.32b.1

http://www.ensembl.org webcite

Rattus norvegicus

Rodentia

Ensembl 22.3b.1

http://www.ensembl.org webcite

Gallus gallus

Aves

Ensembl 22.1.1

http://www.ensembl.org webcite

Takifugu rubripes

Pisces

Ensembl 22.2c.1

http://www.ensembl.org webcite

Danio rerio

Pisces

Ensembl 22.3b.1

http://www.ensembl.org webcite

Ciona intestinalis

Urochordata

JGI ciona4

http://genome.jgi-psf.org webcite

Drosophila melanogaster

Arthropoda

Ensembl 22.3a.1

http://www.ensembl.org webcite

Anopheles gambiae

Arthropoda

Ensembl 22.2b.1

http://www.ensembl.org webcite

Caenorhabditis elegans

Nematoda

Ensembl 22.116a.1

http://www.ensembl.org webcite

Caenorhabditis briggsae

Nematoda

Ensembl 24.24.1

http://www.ensembl.org webcite

Ustilago maydis

Basidiomycota

Broad release 2

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Phanerochaete chrysosporium

Basidiomycota

JGI whiterot1

http://genome.jgi-psf.org webcite

Cryptococcus neoformans

Basidiomycota

TIGR CNA1

http://www.tigr.org/tdb/fungal/ webcite

Schizosaccharomyces pombe

Ascomycota

Pompep version 19

http://www.sanger.ac.uk/Projects/S_pombe/ webcite

Aspergillus nidulans

Ascomycota

Broad release 1.3

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Fusarium graminearum

Ascomycota

Broad release 1.1

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Trichoderma reesei

Ascomycota

JGI trire1

http://genome.jgi-psf.org webcite

Magnaporthe grisea

Ascomycota

Broad release 2.4

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Neurospora crassa

Ascomycota

Broad release 3

http://www.broad.mit.edu/annotation/fungi/fgi/ webcite

Candida albicans

Ascomycota

Stanford release 19

http://www-sequence.stanford.edu/group/candida/ webcite

Saccharomyces cerevisiae

Ascomycota

Saccharomyces Genome Database

http://www.yeastgenome.org/ webcite

Dehal and Boore BMC Bioinformatics 2006 7:201   doi:10.1186/1471-2105-7-201