Table 6

Performance results for contact map prediction. Contact threshold: 12 Å. Accuracy, coverage and F1 (as %) for 12 Å contact map predictor for distance separations greater than 5, 11 and 23 amino acids.

|i - j| ≥ 6

|i - j| ≥ 12

|i - j| ≥ 24


P

R

F1

Pnc

P

R

F1

Pnc

P

R

F1

Pnc


MA

60.4

10.6

18.1

87.2

55.8

0.1

0.1

87.8

38.9

0.03

0.06

88.8

MA_PE

49.5

24.5

32.8

88.6

39.4

16.8

23.6

89.3

34.5

13.6

19.5

89.9

MA_SS_ACC

61.6

19.6

29.7

88.2

48.9

7.5

13.1

88.5

40.2

2.8

5.3

89.0

MA_SS_ACC_PE

54.2

23.5

32.8

88.6

42.2

14.6

21.7

89.2

36.7

10.9

16.8

89.7


Vullo et al. BMC Bioinformatics 2006 7:180   doi:10.1186/1471-2105-7-180

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