Table 5

Performance results for contact map prediction. Contact threshold: 8 Å. Accuracy and coverage (as %) for 8 Å contact map predictor for distance separations greater than 5, 11 and 23 amino acids, when the top N/5 and top N/2 contacts are considered (where N is the length of the protein).

|i - j| ≥ 6

|i - j| ≥ 12

|i - j| ≥ 24


N/5

N/2

N/5

N/2

N/5

N/2


P

R

P

R

P

R

P

R

P

R

P

R


MA

30.8

3.9

26.2

8.5

23.9

3.8

19.2

7.8

14.1

3.3

11.1

6.6

MA_PE

43.0

5.5

34.6

11.2

34.2

5.5

26.6

10.8

19.6

4.6

15.0

8.9

MA_SS_ACC

44.4

5.7

36.0

11.6

34.2

5.5

26.6

10.8

17.8

4.2

14.7

8.7

MA_SS_ACC_PE

46.4

5.9

36.6

11.8

35.4

5.7

27.0

11.0

19.8

4.6

15.7

9.3


Vullo et al. BMC Bioinformatics 2006 7:180   doi:10.1186/1471-2105-7-180

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