Table 1

PE prediction: two-class problem. Accuracy estimates with 95% confidence intervals and SOV. A * in the first three columns of a row indicates whether the results are obtained augmenting the network input with secondary structure predicted by Porter (P), hydrophobicity profile using the interactivity scale of [20] (H) and using second stage filtering network (F).

P

H

F

Q₂

Q₀

Q₁

SOV

-

-

-

72.0 ± .6

73.1 ± .6

70.8 ± .6

44.4

-

-

*

72.1 ± .6

73.4 ± .6

70.7 ± .6

46.0

*

-

-

72.3 ± .6

73.1 ± .6

71.4 ± .6

47.6

*

-

*

72.3 ± .6

72.8 ± .6

71.9 ± .6

49.6

*

*

-

72.5 ± .6

74.0 ± .6

71.0 ± .6

47.2

*

*

*

72.6 ± .6

73.8 ± .6

71.2 ± .6

49.8

baseline

56.8 ± .5

58.4 ± .5

55.1 ± .5

-

Vullo et al. BMC Bioinformatics 2006 7:180   doi:10.1186/1471-2105-7-180