A simple introductory example for use of Gaggle. A set of genes (circular nodes with edges represents associations/interactions) selected in Cytoscape (A) are broadcasted to the Gaggle Boss (B). The Gaggle Boss re-routes the broadcast to a Java web browser connected to KEGG (C), further exploration wherein localizes H. pylori proteins to relevant subunits in the flagellar apparatus map. A second goose that receives the broadcast is the DMV (D). A plot function therein provides mRNA levels of the 15 H. pylori genes in 57 experimental conditions.
Shannon et al. BMC Bioinformatics 2006 7:176 doi:10.1186/1471-2105-7-176