Co-occurrence rate of replicate RPSs in DEGs for the wholly defined control dataset. The fraction of replicate RPSs out of all RPSs in DEGs for expression summary datasets generated utilizing combinations of options from different probe set algorithms. The same analysis procedures as in Figure 4 were applied. (a) Comparison of normalization options at the probe set level. (b) Comparison of expression summary options. (c) Comparison of normalization options. (d) Comparison of PM correction options. (e) Comparison of background correction options. (f) Comparison of the selected 10 expression summary datasets to all others.
Hu and Willsky BMC Bioinformatics 2006 7:12 doi:10.1186/1471-2105-7-12