Resolution:
## Figure 3.
Generating the proposal alignment. This figure illustrates the stochastic sequence aligner. In the deterministic fill-in
process, the three scores are s_{1}, s_{2 }and s_{3}, hence the value in this cell is max{s_{1}, s_{2}, s_{3}}. In the stochastic traceback phase, the three neighbor cells are choosen with probabilities
proportional to exp(αs_{i}), where α > 0 is a scaling parameter. The chosen traceback path corresponds to the proposed
alignment in the usual way.
Lunter |