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Open Access Highly Accessed Methodology article

Bayesian coestimation of phylogeny and sequence alignment

Gerton Lunter1*, István Miklós2, Alexei Drummond3, Jens Ledet Jensen4 and Jotun Hein1

Author Affiliations

1 Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK

2 MTA-ELTE Theoretical Biology and Ecology Group, Pázmány Péter sétány 1/c 1117 Budapest, Hungary

3 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK

4 Department of Mathematical Sciences, University of Aarhus, Ny Munkegade, Building 530, DK-8000 Aarhus C, Denmark

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BMC Bioinformatics 2005, 6:83  doi:10.1186/1471-2105-6-83

Published: 1 April 2005

Additional files

Additional File 1:

This XML file specifies the MCMC run for the example phylogeny and alignment co-estimation given in this paper (see Figs. 4, 5, 6). To run, download the BEAST package (AJ Drummond and A Rambaut, http://evolve.zoo.ox.ac.uk/beast webcite.)

Format: XML Size: 10KB Download file

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