|
Data sources included in Atlas. |
||||
| Atlas Data Source Summary Table * |
||||
|
|
||||
| Data Source |
URL |
Data Format |
Atlas Update |
Update Mechanism |
|
|
||||
| GenBank Sequence |
ftp://ftp.ncbi.nih.gov/ncbi-asn1/ |
ASN.1 |
Daily |
Incremental |
| GenBank Sequence |
ftp://ftp.ncbi.nih.gov/ncbi-asn1/ |
ASN.1 |
Release |
Reload |
| GenBank Refseq |
ftp://ftp.ncbi.nih.gov/refseq/ |
ASN.1 |
Daily |
Incremental |
| GenBank Refseq |
ftp://ftp.ncbi.nih.gov/refseq/ |
ASN.1 |
Release |
Reload |
| NCBI Taxonomy |
ftp://ftp.ncbi.nih.gov/pub/taxonomy/ |
Delimited Text |
Release |
Reload |
| HomoloGene |
ftp://ftp.ncbi.nih.gov/pub/HomoloGene/ |
Delimited Text |
Daily |
Reload |
| OMIM |
ftp://ftp.ncbi.nih.gov/repository/OMIM/ |
Delimited Text |
Daily |
Reload |
| Gene |
ftp://ftp.ncbi.nih.gov/gene/ |
Delimited Text |
Daily |
Reload |
| LocusLink |
ftp://ftp.ncbi.nih.gov/refseq/LocusLink/ |
Delimited Text |
Daily |
Reload |
| UniProt |
ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/ |
XML |
Bi-weekly |
Reload |
| HPRD |
http://www.hprd.org/download/ |
XML |
Release |
Reload |
| MINT |
http://mint.bio.uniroma2.it/mint/ |
XML |
Release |
Reload |
| DIP |
http://dip.doe-mbi.ucla.edu/dip/Download.cgi |
XML |
Release |
Reload |
| BIND |
ftp://ftp.blueprint.org/pub/BIND/current/bindflatfiles/bindindex/ |
Delimited Text |
Release |
Reload |
| GO |
http://www.godatabase.org/dev/database/archive/latest/ |
MySQL dump |
Release |
Reload |
|
* up-to-date information about data sources and statistics are available from the Atlas website http://bioinformatics.ubc.ca/atlas/ | ||||
Shah et al. BMC Bioinformatics 2005 6:34 doi:10.1186/1471-2105-6-34 |
||||