Table 5

Representation of the spotted probes exhibiting negative correlation coefficients with Affymetrix probes.

Long oligonucleotide sequence 5'-3'

GenBank accession no.

Probe Set ID RAE230A

Correlation coeficient

CACAGAAGATGGAGAAAATCTAAAG-TGAAAGTGCGCGTGACACACATGCA

^cXM_213699

*NM_001011901

^c1388898_at

-0.37107

CAGACCTTCATCGCTCTGTGTGCTACCGA-CTTCAAGTTTGCCATGTACCCGCCATCGA

^cD16308

^c1370810_at

-0.24892

GGACATCTGAGTTGAGACCCAGTTGTTAC-TAACCTTATTGTGAATTGCCTGATCTACA

^a,bM11794

^a,b1371237_A_AT

-0.13854

ATTCTCTGGTCTAATGTCTGGCTGGGGT-TCTCCGTCTGCTTCCTGTATCTATATTCT

^bM15562

^b1370883_AT

-0.43223

ACTTACAAGGACCAAATACCAAACTAGAAG-AAAAGATAGACATGGTGCCTATTGACTTTC

^cM63101

^c1387835_AT

-0.93746

CTAAAATTGGGCTTGCGGTTTTCATTTCTG-ATGTCTCTGGATTGGCACCCTTATGGTTTA

^a,b,dNM_019356

^b,d1367713_at

-0.88595

GTCTGTAAAATAACCATCAGTTCCTTCAC-CCACCCTCTTCCCCTTAACACTCAGC

^bXM_340904

*NM_012809

^b1387897_at

-0.6239

TGTAAATTACACCACGGACTTCATCTACC-AGCTCTACTCAGAGGAAGGGAAAGGAG

^a,bL25387

^b1372182_at

-0.37801

GTCTTGACAATGTTCACAAACAGAGAGT-GGCTGAAGTGCTAAATGACCCTGAGAA

^a,b,dXM_216792

*XM_343114

^a,b1370886_a_at

-0.82769

a. Low signal intensity (signal below mean of all arrays); b. Affymetrix and long oligonucleotide probes mapped to the APOCHIP target mRNA; c. Affymetrix and long oligonucleotide probes mapped partly or not at all to the APOCHIP target mRNA; d. Probes exhibiting variation close to the lower limits shown in Figure 4. *. New annotation obtained by BLAST.

Magnusson et al. BMC Bioinformatics 2005 6:311   doi:10.1186/1471-2105-6-311