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Seven representative motifs identified by GIMF. |
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| Pathway or complex |
Seed gene |
Motif gene list |
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| 1 |
Actin patch assembly |
ARC40 |
ARP2 |
| 2 |
Chitin synthase III pathway |
CHS7 |
CHS3, SKT5, CHS5 |
| CHS6 |
CHS3, SKT5 |
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| 3 |
Prefoldin complex |
PAC10 |
GIM3, GIM4, GIM5, YKE2 |
| 4 |
Membrane traffic |
ARL1 |
ARL3, RIC1, YPT6 |
| GYP1 |
RIC1 |
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| 5 |
Dynein Dynactin pathway |
DYN1 |
ARP1, DYN1, PAC11, YMR299C, DYN2, JNM1, PAC1, NIP100, NUM1 |
| PAC1 |
ARP1, DYN1, PAC11, YMR299C, DYN2, JNM1, NIP100, NUM1 |
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| JNM1 |
ARP1, DYN1, PAC11, YMR299C, DYN2, NIP100, NUM1 |
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| NUM1 |
JNM1 |
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| 6 |
DNA replication checkpoint |
MRC1 |
TOF1 |
| 7 |
Sister chromatid cohesion |
DCC1 |
CTF4, CTF18 |
| CTF8 |
CTF18, DCC1, CTF4 |
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These gene modules correlate well with pathways inferred by hierarchical clustering (Tong et al. 2004). | |||
Qi et al. BMC Bioinformatics 2005 6:288 doi:10.1186/1471-2105-6-288 |
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