Methodology article
A stepwise framework for the normalization of array CGH data
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* Corresponding author: Mehrnoush Khojasteh mkhojast@bccrc.ca
1 British Columbia Cancer Research Centre, Vancouver, BC, Canada
2 Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada
BMC Bioinformatics 2005, 6:274 doi:10.1186/1471-2105-6-274
Published: 18 November 2005Additional files
Additional File 1:
Supplemental table 1. A description of array CGH experiments that simulate varying degrees of normal diploid cells contamination in a population of cancer cells carrying a single copy alteration. A more detailed description can be found in [5].
Additional file 2 - Supplemental table 2
Format: DOC Size: 39KB Download file
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Additional File 2:
Supplemental table 2. A Description of array CGH experiments involving hybridization of genomic DNAs from cell lines containing varying numbers of X chromosomes that simulate varying levels of gene amplification and deletion for each of the X-chromosomal genes present on the cDNA array. A more detailed description can be found in http://smd.stanford.edu webcite.
Additional file 2 - Supplemental table 2
Format: DOC Size: 30KB Download file
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