Table 4

Potential novel CRMs predicted by HexDiff and other algorithms. All of the predicted CRMs listed in this table were predicted by HexDiff and at least two other algorithms. The column labeled "Gene" lists the gene involved in the early development of Drosophila that is closest to the predicted CRM. The columns labeled 1–5 are the different algorithms whose predictions matched the CRMs predicted by HexDiff: 1 – Ahab, 2 – Cluster Buster, 3 – MSCAN, 4 – MCAST, and 5 – LWF. The predicted CRMs were also compared to a compilation of 124 CRMs [32] – matching CRMs are listed in the last column.

Gene

Arm

Begin

End

Length

1

2

3

4

5

Matched


btd

X

9534921

9535192

271

*

*

eve

2R

5492385

5493575

1190

*

*

eve_late2_mel

fkh

3R

24421705

24422385

680

*

*

ftz

3R

2683060

2683406

346

*

*

gt

X

2268347

2270179

1832

*

*

*

gt

X

2290228

2290685

457

*

*

*

*

*

gt_23-bcd_mel

hb

3R

4503375

4503962

587

*

*

*

hb

3R

4519805

4520172

367

*

*

kni

3L

20628230

20628504

274

*

*

*

*

kni_+1_mel

prd

2L

12080435

12082316

1881

*

*

*

prd_bcd_mel

prd

2L

12089627

12089847

220

*

*

prd_1_mel

run

X

20488169

20488643

474

*

*

*

*

run

X

20524260

20524722

462

*

*

*

*

slp1

2L

3811050

3812092

1042

*

*

slp1

2L

3822581

3823049

468

*

*

slp1

2L

3824891

3825039

148

*

*

*

*

*

slp_A-bcd_mel

slp1

2L

3833433

3834671

1238

*

*

*

*

slp2_-3_mel

tll

3R

26680559

26683175

2616

*

*

*

tll_bcd_mel


Chan and Kibler BMC Bioinformatics 2005 6:262   doi:10.1186/1471-2105-6-262

Open Data