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Current data analysis and display modules |
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| Method Name |
Reference |
Method Description |
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| Simple Count |
FACT |
Count and display of occurrences of annotation terms |
| GO-Term Comparison |
In part from GO::TermFinder [15] |
Detection of significantly overrepresented GO terms in Gene List, based upon hypergeometric tail probability |
| MedLiner |
Bio::Biblio (M. Senger, EBI) |
List Publications with co-occurrences of terms |
| CGH database |
Deutsches Krebsforschungs-zentrum, Div. Molecular Genetics (D) |
Compare CGH results to archived data |
| goCluster |
goCluster, G. Wrobel, available at http://www.bioconductor.org |
Detection of significantly overrepresented GO terms (based upon Fisher's exact test) in Clusters built with k-means algorithm |
| Hypergeometric Tail |
In part from GeneMerge [14] |
Detection of significantly overrepresented terms of any kind, based upon hypergeometric tail probability |
| CGH – Expression Comparison |
FACT |
Detect correlation between genomic and expression data sets, based on two-sided T-Tests |
| Chromosomal Plot |
FACT |
Display values or occurrences in genomic context |
Kokocinski et al. BMC Bioinformatics 2005 6:161 doi:10.1186/1471-2105-6-161 |
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