Table 1

AutoFACT annotation classes
Annotation Class
 Hit to LSU or SSU rRNA database
 Hit to UniRef, nr, KEGG and/or COG
 Hit is inform-ative
 Hits share common inform-ative terms
 Hit to Pfam or Smart
 Hit to est_others
"Ribosomal RNA"
 YES
 N/A
 N/A
 N/A
 N/A
 N/A
" [Functionally Annotated] protein"
 NO
 YES
 YES
 YES
 N/A
 N/A
"Unassigned protein"
 NO
 YES
 YES/NO
 NO
 NO
 N/A
" [Domain name]-containing protein"
 NO
 YES/NO
 NO
 NO
 YES
 N/A
"Unknown EST"
 NO
 NO
 N/A
 N/A
 NO
 YES
"Unclassified"
 NO
 NO
 N/A
 N/A
 NO
 NO

Koski et al. BMC Bioinformatics 2005 6:151   doi:10.1186/1471-2105-6-151