Table 1

Summary of mapping cDNA microarray features to probes on Affymetrix gene-chips.

    NCI-60 – HuFL

    Brc 8k – HuFL

    Brc8k – U95Av2

    Lung – U95Av2


Total cDNA clones

9707

8820

8820

22691

Clones with both reads sequenced

6222

7015

7015

18645

Clones with predicted insert region

4639

6354

6354

14813

Total Probe-sets defined

1765

2403

3103

4597

Total (perfect match) probes on Affymetrix platform

131541

131541

199084

199084

Total mapped probes

26347

37559

48250

70001

Probes mapped to multiple clones

904

3224

4019

26765

Number of probe-sets with > 1 Affymetrix "probe-set" represented

115

310

664

888


Carter et al. BMC Bioinformatics 2005 6:107   doi:10.1186/1471-2105-6-107

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