Table 1 |
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|
Summary of mapping cDNA microarray features to probes on Affymetrix gene-chips. |
||||
|
NCI-60 – HuFL |
Brc 8k – HuFL |
Brc8k – U95Av2 |
Lung – U95Av2 |
|
|
|
||||
|
Total cDNA clones |
9707 |
8820 |
8820 |
22691 |
|
Clones with both reads sequenced |
6222 |
7015 |
7015 |
18645 |
|
Clones with predicted insert region |
4639 |
6354 |
6354 |
14813 |
|
Total Probe-sets defined |
1765 |
2403 |
3103 |
4597 |
|
Total (perfect match) probes on Affymetrix platform |
131541 |
131541 |
199084 |
199084 |
|
Total mapped probes |
26347 |
37559 |
48250 |
70001 |
|
Probes mapped to multiple clones |
904 |
3224 |
4019 |
26765 |
|
Number of probe-sets with > 1 Affymetrix "probe-set" represented |
115 |
310 |
664 |
888 |
|
|
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|
Carter et al. BMC Bioinformatics 2005 6:107 doi:10.1186/1471-2105-6-107 |
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