Methodology article
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
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* Corresponding author: Zoltan Szallasi zszallasi@chip.org
1 Children's Hospital Informatics Program, Harvard Medical School, Boston, MA, 02115 USA
2 Laboratory of Functional Genomics, Brigham and Women's Hospital, 65 Landsdowne Street, Cambridge, MA 02139, USA
BMC Bioinformatics 2005, 6:107 doi:10.1186/1471-2105-6-107
Published: 25 April 2005Additional files
Additional File 1:
ZIP of 4 files allowing the remapping Affymetrix probe-sets described in this manuscript. These files can be used with the "altcdfenvs" package in Bioconductor to implement the redefinition of probe-sets based on sequence-matching with each of the 4 cDNA datasets described.
Format: ZIP Size: 1.3MB Download file
