Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

Open Access Highly Accessed Methodology article

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

Scott L Carter1, Aron C Eklund2, Brigham H Mecham1, Isaac S Kohane1 and Zoltan Szallasi1*

Author Affiliations

1 Children's Hospital Informatics Program, Harvard Medical School, Boston, MA, 02115 USA

2 Laboratory of Functional Genomics, Brigham and Women's Hospital, 65 Landsdowne Street, Cambridge, MA 02139, USA

For all author emails, please log on.

BMC Bioinformatics 2005, 6:107  doi:10.1186/1471-2105-6-107

Published: 25 April 2005

Additional files

Additional File 1:

ZIP of 4 files allowing the remapping Affymetrix probe-sets described in this manuscript. These files can be used with the "altcdfenvs" package in Bioconductor to implement the redefinition of probe-sets based on sequence-matching with each of the 4 cDNA datasets described.

Format: ZIP Size: 1.3MB Download file

Open Data