|
Example of consolidation of BLAST output data for glutamine-hydrolyzing NAD(+) synthase. |
||||
| Sequences producing significant alignments |
E-value |
rank in output |
fraction aligned |
|
|
|
||||
| Hits found by Query Isozyme Q9CBZ6 |
||||
| CC3619 NAD(+) synthetase, putative |
0.0 |
1 |
0.99 |
|
| CC2963 hydrolase, carbon-nitrogen family |
0.010 |
2 |
0.06 |
|
| CC3013 TonB-dependent receptor |
0.34 |
3 |
0.07 |
|
| Hits found by Query Isozyme Q58747 |
||||
| CC3619 NAD(+) synthetase, putative |
3e-07 |
1 |
0.70 |
|
| CC1620 GMP synthase |
0.029 |
2 |
0.14 |
|
| CC0705 ORF |
0.15 |
3 |
0.34 |
|
| Hits found by Query Isozyme F86762 |
||||
| CC3460 ORF |
0.024 |
1 |
0.43 |
|
| CC3619 NAD(+) synthetase, putative |
0.092 |
2 |
0.48 |
|
| CC1541 2-isopropylmalate synthase |
0.80 |
3 |
0.16 |
|
| Hits found by Query Isozyme P18843 |
||||
| CC3619 NAD(+) synthetase, putative |
2e-04 |
1 |
0.49 |
|
| CC1541 2-isopropylmalate synthase |
0.36 |
2 |
0.43 |
|
| Hits found by Query Isozyme P47623 |
||||
| CC3619 NAD(+) synthetase, putative |
6e-05 |
1 |
0.55 |
|
| CC1620 GMP synthase |
0.24 |
2 |
0.09 |
|
| Results of data consolidation |
||||
|
|
||||
| consolidated data for hits from target genome |
shotgun-score |
best-E-value |
average-rank |
average-fraction-aligned |
|
|
||||
| CC3619 |
5 |
0.0 |
1.2 |
0.64 |
| CC1620 |
2 |
0.029 |
2 |
0.12 |
| CC1541 |
2 |
0.36 |
2 |
0.30 |
| CC3460 |
1 |
0.024 |
1 |
0.43 |
| CC2963 |
1 |
0.010 |
2 |
0.06 |
| CC3013 |
1 |
0.34 |
3 |
0.07 |
| CC0705 |
1 |
0.15 |
3 |
0.34 |
Green and Karp BMC Bioinformatics 2004 5:76 doi:10.1186/1471-2105-5-76 |
||||